| Waterbody ID | Resource Name | Alt. Names | Type |
| 160394 | Alfred, Lake | | Lake |
| 9000261 | Alligator Branch | | Stream |
| 9000128 | Alligator Creek (2030A) | | Stream |
| 9000395 | Alligator Creek (2074) | | Stream |
| 9000319 | Alligator Creek (North Fork) | | Stream |
| 9000393 | Alligator Creek (North Prong) | | Stream |
| 9000127 | Alligator Creek (Tidal Segment) (2030) | | Bay |
| 9000085 | Alligator Creek (Tidal Segment) (2074B) | | Bay |
| 9000396 | Alligator Lake | | Lake |
| 9000490 | Anglers Lake | Sunshine Lake | Lake |
| 160723 | Annie, Lake | | Lake |
| 9000380 | Apollo Waterway | | Bay |
| 160450 | Ariana, Lake | | Lake |
| 160390 | Arietta, Lake | Lighterlog | Lake |
| 160878 | Ashton, Lake | Myrtle Lake | Lake |
| 16667 | Audubon Rookery Pond | Pond P28-50 | Lake |
| 320118 | Avalon Preserve | | Lake |
| 160778 | Banana Lake | | Lake |
| 9000058 | Banana Lake Canal | | Stream |
| 320139 | Beach Walk | | Pond |
| 9000202 | Bear Branch (1631) | | Stream |
| 9000278 | Bear Branch (1948) | | Stream |
| 9000420 | Bear Branch (2094) | | Stream |
| 9000204 | Bear Branch @ Us 98 | | Stream |
| 9000153 | Bedman Creek | | Stream |
| 9000149 | Bee Branch | | Stream |
| 160655 | Bentley, Lake | | Lake |
| 161922 | Bess, Lake | | Lake |
| 9000121 | Big Slough Canal (Potable Portion) | | Stream |
| 9000351 | Big Slough Canal (Tidal) | | Bay |
| 320099 | Bill Rose Pond | | Lake |
| 9000178 | Billy Creek | | Stream |
| 9000177 | Billy Creek (Marine Segment) | | Bay |
| 9000448 | Blackburn Canal | | Stream |
| 161339 | Blue Lake (Highland Park) | Big Blue, Little Blue | Lake |
| 160543 | Blue, Lake (Winter Haven) | Blue 2 | Lake |
| 9000372 | Blueridge Waterway | | Stream |
| 9000299 | Bobcat Creek | | Stream |
| 9000412 | Boggess Hole | | Bay |
| 9000062 | Boggy Branch (1622D) | | Stream |
| 9000206 | Boggy Branch (1722) | | Stream |
| 9000061 | Boggy Branch (Lake Garfield Outlet) | | Stream |
| 9000336 | Boggy Creek | | Stream |
| 9000492 | Bonny, Lake (Lakeland) | | Lake |
| 9000205 | Bowlegs Creek | | Stream |
| 9000207 | Bowlegs Creek Above Boggy Creek | | Stream |
| 9000233 | Bowling Green Run | | Stream |
| 9000275 | Brandy Branch | | Stream |
| 320165 | Bridge Town (97.1) | | Pond |
| 320167 | Bridge Town (97.2) | | Pond |
| 320166 | Bridge Town (97.3) | | Pond |
| 320180 | Broadmoor Pond 1 | | Lake |
| 320179 | Broadmoor Pond 2 | | Lake |
| 320087 | Brookshire | | Lake |
| 160352 | Brown, Lake | | Lake |
| 9000040 | Brush Lake Outlet | | Stream |
| 161102 | Brush, Lake | | Lake |
| 9000246 | Brushy Creek | | Stream |
| 9000129 | Buck Creek | | Bay |
| 160570 | Buckeye, Lake | | Lake |
| 9000251 | Buckhorn Creek | | Stream |
| 9000347 | Bud Slough | | Stream |
| 161497 | Buffum, Lake | | Lake |
| 9000403 | Burnt Store Marina | | Bay |
| 320173 | Bush Pond | | Pond |
| 160455 | Butler, Lake | | Lake |
| 9000276 | Buzzard Roost Branch | | Stream |
| 9000168 | C-19 Canal | | Stream |
| 320117 | Caloosa Creek | | Pond |
| 320124 | Caloosa Yacht & Racquet Club (1) | | Lake |
| 320125 | Caloosa Yacht & Racquet Club (3) | | Lake |
| 9000089 | Caloosahatchee River | | Stream |
| 1 | Caloosahatchee River Basin | | Watershed |
| 160340 | Camp Lake | | Lake |
| 320114 | Candlewood Lake | | Lake |
| 160569 | Cannon, Lake | | Lake |
| 9000109 | Cape Coral (Tidal Segment) | | Bay |
| 9000115 | Cape Coral (West) | | Bay |
| 9000169 | Cape Coral Canals | | Stream |
| 9000417 | Captiva Island | | Bay |
| 320096 | Care Free | | Lake |
| 9000184 | Carrell Canal | | Stream |
| 320074 | Casa de Meadows Lake | | Lake |
| 9000399 | Catfish Creek Bayou | | Bay |
| 9000171 | Chapel Creek/Bayshore Creek | | Stream |
| 9000172 | Chapel Creek/Bayshore Creek (Marine Segments) | | Bay |
| 9000218 | Charlie Creek | | Stream |
| 9000388 | Charlotte Harbor | | Bay |
| 2 | Charlotte Harbor Basin | | Watershed |
| 320027 | Chilton, Lake | | Lake |
| 160552 | Citrus, Lake | | Lake |
| 9000136 | Clam Bayou | | Bay |
| 9000314 | Cleveland Cemetery Ditch | | Bay |
| 320164 | Coconut Creek (95.R) | | Pond |
| 320163 | Coconut Creek (95.T) | | Pond |
| 9000360 | Cocoplum Waterway Tributary | | Stream |
| 9000331 | Coker Creek | | Stream |
| 160391 | Confusion, Lake | | Lake |
| 160512 | Conine, Lake | Lake Connie | Lake |
| 320143 | Convention Center Pond | | Pond |
| 9000241 | Coons Bay Branch | | Stream |
| 9000464 | Coral Creek (East Branch) | | Bay |
| 9000463 | Coral Creek (West Branch) | | Bay |
| 320097 | Corkscrew Woodland | | Lake |
| 9000223 | County Line Creek | | Stream |
| 9000080 | Cow Pen Slough | | Stream |
| 9000285 | Cow Slough | | Stream |
| 160427 | Crago, Lake | | Lake |
| 320116 | Crown Colony | | Pond |
| 320115 | Crown Colony (1) | | Pond |
| 320086 | Crystal Lake | | Lake |
| 160629 | Crystal Lake (Lakeland) | | Lake |
| 160453 | Cummings, Lake | | Lake |
| 9000445 | Curry Creek | | Stream |
| 9000444 | Curry Creek (Tidal Portion) | | Bay |
| 9000271 | Cypress Branch (1915) | | Stream |
| 9000151 | Cypress Branch (3235G) | | Stream |
| 9000090 | Cypress Creek | | Stream |
| 9000302 | Cypress Slough | | Stream |
| 160720 | Daisy, Lake | | Lake |
| 9000095 | Daughtrey Creek | | Stream |
| 9000110 | Deep Lagoon Canal | | Bay |
| 9000122 | Deer Prairie Creek | | Stream |
| 9000119 | Deer Prairie Slough | | Stream |
| 160628 | Deer, Lake (Winter Haven) | | Lake |
| 160734 | Dexter, Lake | | Lake |
| 160737 | Dinner Lake (Winter Haven) | | Lake |
| 9000392 | Direct Runoff to Bay (2066) | | Bay |
| 9000458 | Direct Runoff to Bay (2072) | | Bay |
| 9000397 | Direct Runoff to Bay (2077) | | Stream |
| 9000400 | Direct Runoff to Bay (2081) | | Stream |
| 9000410 | Direct Runoff To Bay (2087) | | Bay |
| 9000411 | Direct Runoff to Bay (2088) | | Stream |
| 9000413 | Direct Runoff to Bay (2091) | | Stream |
| 9000414 | Direct Runoff To Bay (2092A) | | Bay |
| 9000418 | Direct Runoff to Bay (2093) | | Stream |
| 9000318 | Direct Runoff to Stream (2061) | | Bay |
| 9000243 | Doe Branch | | Stream |
| 9000154 | Dog Canal | | Stream |
| 9000460 | Don Pedro Island | | Bay |
| 3 | Dona & Roberts Bay Basin | | Watershed |
| 9000441 | Dona Bay | | Bay |
| 320045 | Donut, Lake | | Lake |
| 160715 | Eagle Lake | | Lake |
| 9000052 | Eagle Lake Outlet | | Stream |
| 9000255 | East Branch Troublesome Creek | | Stream |
| 9000364 | East Cocoplum Waterway | | Stream |
| 9000457 | East Drainage Waterway | | Stream |
| 320177 | East Rock Lake (East) | | Lake |
| 320176 | East Rock Lake (West) | | Lake |
| 160461 | Echo, Lake | | Lake |
| 161044 | Effie, Lake | | Lake |
| 160620 | Elbert, Lake | Little Elbert | Lake |
| 9000268 | Elder Branch | | Stream |
| 160735 | Eloise, Lake | | Lake |
| 160907 | Engle Lake | | Lake |
| 9000454 | Englewood Coastal Drainage | | Bay |
| 9000142 | Estero Bay | | Bay |
| 4 | Estero Bay Basin | | Watershed |
| 9000107 | Estero Bay Wetlands | | Bay |
| 9000086 | Estero River | | Stream |
| 160421 | Eva, Lake (Haines City) | | Lake |
| 160504 | Fannie, Lake | Lake Fanny | Lake |
| 9000011 | Fiddlesticks Canal | | Stream |
| 9000273 | Fish Branch | | Stream |
| 9000078 | Fish Camp Drain | | Stream |
| 9000260 | Fivemile Gully | | Stream |
| 9000167 | Flaghole Canal | | Stream |
| 9000304 | Flopbuck Creek | | Bay |
| 160695 | Florence, Lake | | Lake |
| 9000179 | Ford Street Canal | | Stream |
| 9000019 | Forked Creek | | Bay |
| 161624 | Fort Meade Lakes | Pleasant Grove, Patterson Park, Chain of Lakes | Lake |
| 9000155 | Fort Simmons Branch | | Stream |
| 9000440 | Fox Creek | | Stream |
| 320135 | Fred Geist | | Pond |
| 161324 | Gadau Lake | | Lake |
| 9000297 | Gannet Slough | | Stream |
| 161045 | Garfield, Lake | | Lake |
| 9000002 | Gaskin Branch | | Stream |
| 9000415 | Gasparilla Island | | Bay |
| 160917 | Gate Lake | | Lake |
| 320161 | Gateway Communities (90.1) | | Pond |
| 320159 | Gateway Communities (90.4) | | Pond |
| 320160 | Gateway Communities (90.5) | | Pond |
| 320162 | Gateway Communities (90.83) | | Pond |
| 320069 | Gator Lake | | Lake |
| 9000405 | Gator Slough Canal | | Stream |
| 160603 | Gem, Lake | | Lake |
| 160484 | George, Lake (Winter Haven) | | Lake |
| 160368 | Gibson, Lake | | Lake |
| 9000423 | Gilchrest Drain | | Stream |
| 9000228 | Gilshey Branch | | Stream |
| 320119 | Gladiolus Preserve | | Pond |
| 9000453 | Goldfish Creek | | Stream |
| 9000157 | Goodno Canal | | Stream |
| 160562 | Gordon, Lake | Lake Hamilton | Lake |
| 161300 | Gordon, Lake (Alturas) | | Lake |
| 161361 | Gordon, Southwest Lake (Alturas) | | Lake |
| 9000452 | Gottfried Creek | | Bay |
| 160389 | Grass Lake (Winter Haven) | | Lake |
| 9000050 | Grassy Lake | | Lake |
| 160377 | Griffin, Lake | Lake Alfred | Lake |
| 320089 | Gulf Harbor (1) | | Lake |
| 320090 | Gulf Harbor (3) | | Lake |
| 320091 | Gulf Harbor (4) | | Lake |
| 320092 | Gulf Harbor (6) | | Lake |
| 320093 | Gulf Harbor (7) | | Lake |
| 320094 | Gulf Harbor (8) | | Lake |
| 14143 | Gulf of Mexico | | Gulf |
| 320035 | Gulf Pines, Lake | | Lake |
| 320036 | Gulf Shores West, Lake | | Lake |
| 320034 | Gulf Shores, Lake | | Lake |
| 160306 | Gum Lake | | Lake |
| 9000236 | Gum Swamp Branch | | Stream |
| 9000016 | H Canal | | Stream |
| 160416 | Haines, Lake | | Lake |
| 9000013 | Halfway Creek | | Stream |
| 160497 | Hamilton, Lake | | Lake |
| 9000281 | Hampton Branch | | Stream |
| 9000094 | Hancock Creek | | Bay |
| 160718 | Hancock, Lake | | Lake |
| 160877 | Hart, Lake (Winter Haven) | | Lake |
| 160517 | Hartridge, Lake | | Lake |
| 9000447 | Hatchett Creek | | Stream |
| 9000446 | Hatchett Creek (Tidal) | | Bay |
| 320170 | Hawthorne (99.1) | | Pond |
| 320172 | Hawthorne (99.4) | | Pond |
| 320169 | Hawthorne (99.6) | | Pond |
| 320171 | Hawthorne (99.8) | | Pond |
| 9000293 | Hawthorne Creek | | Stream |
| 9000100 | Hendry Creek | | Bay |
| 9000483 | Hendry Creek Estuary Region | | Bay |
| 160417 | Henry, Lake (Haines City) | Drane | Lake |
| 320145 | Heritage Cove (83.2) | | Lake |
| 320140 | Heritage Cove (83.4) | | Lake |
| 320141 | Heritage Cove (83.5) | | Lake |
| 320142 | Heritage Cove (83.6) | | Lake |
| 320103 | Heritage Palm (2) | | Pond |
| 320109 | Heritage Palm (3) | | Pond |
| 320110 | Heritage Palm (4) | | Pond |
| 16749 | Heron Lakes Pond P28-80 | | Lake |
| 160374 | Hester, Lake | | Lake |
| 9000232 | Hickey Branch | | Stream |
| 9000152 | Hickey Creek | | Stream |
| 9000258 | Hickory Branch | | Stream |
| 9000259 | Hickory Creek | | Stream |
| 9000294 | Hog Bay | | Stream |
| 9000239 | Hog Branch (1814) | | Stream |
| 9000419 | Hog Branch (2093A) | | Stream |
| 320009 | Hog Lake | | Lake |
| 9000067 | Hog Lake Outlet | | Stream |
| 160625 | Hollingsworth, Lake | | Lake |
| 160597 | Holloway, Lake | | Lake |
| 9000289 | Honey Run | | Stream |
| 160609 | Horney, Lake | | Lake |
| 9000229 | Horse Creek | | Stream |
| 9000421 | Horseshoe Hermosa Canals | | Stream |
| 9000071 | Howard Creek | | Stream |
| 160613 | Howard, Lake | | Lake |
| 9000303 | Huckaby Creek | | Bay |
| 320113 | Hugh Heiler Pond | | Lake |
| 160575 | Idyl, Lake | | Lake |
| 160522 | Idylwild, Lake | | Lake |
| 9000006 | Imperial River | | Stream |
| 9000014 | Imperial River (Marine Segment) | | Bay |
| 9000482 | Imperial River Estuary Region | | Bay |
| 160703 | Ina, Lake | | Lake |
| 9000341 | Indian Creek | | Stream |
| 9000266 | Indian Mound Drain | | Stream |
| 9000450 | Intracoastal Waterway (ICWW) | | Bay |
| 320129 | Island Preserve | | Pond |
| 9000005 | Jacks Branch | | Stream |
| 9000264 | Jackson Branch | | Stream |
| 161919 | Jessie, Lake | | Lake |
| 160349 | Joe, Lake | | Lake |
| 160708 | John, Lake | | Lake |
| 9000328 | Johnson Creek | | Stream |
| 9000280 | Joshua Creek | | Stream |
| 9000138 | Kehl Canal | | Stream |
| 320168 | King Pond | | Pond |
| 9000106 | L Canal | | Stream |
| 320038 | Lady Finger, Lake | | Lake |
| 9000371 | Lagoon Waterway | | Stream |
| 9000046 | Lake Ariana Drain | | Stream |
| 17003 | Lake Awesome | | Lake |
| 9000493 | Lake Belle | | Lake |
| 9000494 | Lake Blue | | Lake |
| 9000042 | Lake Buffum Drain | | Stream |
| 9000245 | Lake Dale Branch | | Stream |
| 9000039 | Lake Effie Outlet | | Stream |
| 9000114 | Lake Gumbo | | Lake |
| 9000022 | Lake Hamilton Canal | | Stream |
| 9000023 | Lake Hamilton Drain | | Stream |
| 9000024 | Lake Hamilton Outlet | | Stream |
| 9000060 | Lake Hancock Drain | | Stream |
| 9000064 | Lake Hancock Outlet | | Stream |
| 9000166 | Lake Hicpochee | | Stream |
| 9000186 | Lake Ida (Winter Haven) | | Lake |
| 9000043 | Lake Lena Run | | Stream |
| 9000025 | Lake Lulu Outlet | | Stream |
| 9000030 | Lake Lulu Run | | Stream |
| 9000034 | Lake Mcleod Outlet | | Stream |
| 9000074 | Lake Myakka Drain (Lower Segment) | | Stream |
| 9000077 | Lake Myakka Drain (Upper Segment) | | Stream |
| 9000035 | Lake Myrtle Outlet | | Stream |
| 9000284 | Lake Slough | | Stream |
| 9000300 | Lee Branch | | Stream |
| 160772 | Lee, Lake (N Of Waverly) | | Lake |
| 320082 | Leisure Time Park in Bonita | | Lake |
| 9000087 | Leitner Creek | | Stream |
| 5 | Lemon Bay Basin | | Watershed |
| 9000462 | Lemon Creek | | Bay |
| 160502 | Lena, Lake | | Lake |
| 9000252 | Lettis Creek | | Stream |
| 9000272 | Limestone Creek | | Stream |
| 320131 | Linda Ponader Pond | | Pond |
| 9000028 | Link Lake Outlet | | Stream |
| 160649 | Link, Lake | | Lake |
| 9000117 | Little Alligator Creek | | Bay |
| 160794 | Little Banana Lake | | Lake |
| 9000068 | Little Charlie Bowlegs | | Stream |
| 9000225 | Little Charlie Creek | | Stream |
| 9000459 | Little Gasparilla Island | | Bay |
| 160480 | Little Lake Hamilton | | Lake |
| 320040 | Little Murex, Lake | New Lake Murex | Lake |
| 9000222 | Little Payne Creek | | Stream |
| 9000125 | Little Salt Creek | | Bay |
| 15416 | Little Salt Spring | | Bay |
| 161462 | Lizzie Lake | Lizz | Lake |
| 9000332 | Long Creek | | Stream |
| 9000165 | Long Hammock Creek | | Stream |
| 9000248 | Lower Bee Branch | | Stream |
| 9000130 | Lower Lemon Bay | | Bay |
| 14607 | Lower Myakka Lake | | Lake |
| 9000108 | Lower Tidal Caloosahatchee River | | Bay |
| 160469 | Lucerne, Lake | | Lake |
| 160721 | Lulu, Lake | | Lake |
| 9000443 | Lyons Bay | | Bay |
| 9000442 | Lyons Bay Canals | | Bay |
| 160812 | Mabel, Lake | Mable | Lake |
| 9000461 | Manasota Key | | Bay |
| 9000118 | Manchester Way | | Bay |
| 9000394 | Mangrove Point Canal | | Bay |
| 9000183 | Manuel Branch | | Stream |
| 9000339 | Maple Creek | | Stream |
| 9000286 | Mare Branch | | Stream |
| 160648 | Mariam, Lake | Lake Marion | Lake |
| 160457 | Marianna, Lake (Sanitary) | Mariana | Lake |
| 160615 | Martha, Lake | Martha | Lake |
| 9000099 | Matlacha Pass | | Bay |
| 160578 | Maude, Lake | | Lake |
| 9000249 | Max Branch | | Stream |
| 160659 | May, Lake | | Lake |
| 9000290 | Mcbride Slough | | Stream |
| 9000004 | Mccullough Creek | | Stream |
| 320080 | McGregor Woodland | | Lake |
| 160811 | Mcleod, Lake | | Lake |
| 320120 | Meadow Brook Lakes | | Pond |
| 160646 | Menzie, Lake | | Lake |
| 160496 | Middle Lake Hamilton | | Lake |
| 9000093 | Middle Tidal Caloosahatchee River | | Bay |
| 160816 | Millsite Lake | | Lake |
| 9000190 | Mined Area (1616) | | Stream |
| 9000209 | Mined Area (1738) | | Stream |
| 9000263 | Mineral Branch | | Stream |
| 160566 | Mirror, Lake (Lakeland) | | Lake |
| 160582 | Mirror, Lake (Winter Haven) | | Lake |
| 160591 | Morton, Lake | | Lake |
| 9000350 | Mossy Island Slough | | Stream |
| 9000408 | Mound Creek | | Stream |
| 160916 | Mountain Lake (N Of Lake Wales) | | Lake |
| 9000345 | Mud Lake Slough | | Stream |
| 9000203 | Mule Island Ditches | | Stream |
| 9000010 | Mullock Creek | | Stream |
| 9000101 | Mullock Creek (Marine Segment) | | Bay |
| 320041 | Murex, Lake | | Lake |
| 9000317 | Myakka Cutoff (Eastern Portion) | | Bay |
| 9000316 | Myakka Cutoff (Western Portion) | | Bay |
| 9000070 | Myakka River | | Stream |
| 9000356 | Myakka River (Tidal Segment) | | Bay |
| 9000075 | Myakka River at Myakka River State Park | | Stream |
| 6 | Myakka River Basin | | Watershed |
| 9000357 | Myakka River Below Blackburn Bridge | | Bay |
| 9000292 | Myrtle Slough | | Stream |
| 9000098 | Myrtle Slough (2054) | | Stream |
| 160722 | Ned Lake | | Lake |
| 9000375 | New London Waterway | | Stream |
| 9000003 | North Bear Branch | | Stream |
| 9000352 | North New Castle Waterway | | Stream |
| 9000262 | Oak Creek (1873) | | Stream |
| 9000267 | Oak Creek (1897) | | Stream |
| 9000140 | Oak Creek (3258F) | | Stream |
| 9000287 | Oak Hill Branch | | Stream |
| 9000337 | Ogleby Creek | | Stream |
| 9000159 | Okaloacoochee Branch | | Stream |
| 9000066 | Old Town Creek | | Stream |
| 9000160 | Olga Creek | | Stream |
| 9000234 | Olive Branch | | Stream |
| 9000092 | Orange River | | Stream |
| 9000274 | Osborn Branch | | Stream |
| 160647 | Otis, Lake | Little Otis | Lake |
| 9000176 | Otter Creek | | Stream |
| 9000335 | Owen Branch | | Stream |
| 9000338 | Owen Creek | | Stream |
| 9000007 | Owl Creek | | Stream |
| 9000131 | Oyster Creek | | Bay |
| 9000164 | Padgett Ranch Canal / Turkey Creek | | Stream |
| 9000008 | Palm Creek | | Stream |
| 320123 | Palm Island | | Pond |
| 160501 | Pansy, Lake | | Lake |
| 9000227 | Parker Branch | | Stream |
| 320133 | Parker Lakes | | Lake |
| 320075 | Parker Lakes (Enclave) | | Pond |
| 160449 | Parker, Lake (Lakeland) | | Lake |
| 161014 | Parker, Lake (W Of Lake Wales) | | Lake |
| 9000213 | Payne Creek | | Stream |
| 9000032 | Peace Creek Drainage Canal | | Stream |
| 9000038 | Peace Creek Tributary Canal | | Stream |
| 9000063 | Peace River | | Stream |
| 7 | Peace River Basin | | Watershed |
| 9000307 | Peace River Estuary (Upper Segment North) | | Bay |
| 320126 | Pelican Landing | | Pond |
| 320138 | Pelican Preserve | | Lake |
| 320137 | Pelican Preserve (7) | | Lake |
| 320081 | Peppertree Point | | Lake |
| 320104 | Peppertree Point (3) | | Pond |
| 9000133 | Pine Island | | Bay |
| 320079 | Pine Island Cove | | Lake |
| 9000132 | Pine Island Sound | | Bay |
| 8 | Pine Island Sound Basin | | Watershed |
| 320112 | Pineridge | | Lake |
| 9000401 | Pirate Canal | | Stream |
| 9000242 | Plunder Branch | | Stream |
| 9000150 | Pollywog Creek | | Stream |
| 9000009 | Popash Creek | | Stream |
| 9000312 | Port Charlotte Canal System | | Stream |
| 9000096 | Powell Creek | | Stream |
| 9000069 | Prairie Creek | | Stream |
| 9000270 | Punch Gully | | Stream |
| 9000321 | Punta Gorda Isles | | Bay |
| 160889 | Rattlesnake Lake | | Lake |
| 9000488 | Reclaimed Mine Cut Lake | Big Bass Lake, Little Bass Lake, Boca Cove, Gaskin's Cut, Floral Lake | Lake |
| 160866 | Reeves Lake | | Lake |
| 160682 | Ring, Lake | | Lake |
| 320095 | River Forest | | Lake |
| 9000187 | River Lake | | Lake |
| 9000449 | Roberts Bay | | Bay |
| 9000158 | Roberts Canal | | Stream |
| 160476 | Rochelle, Lake | | Lake |
| 9000381 | Rock Creek (2045) | | Bay |
| 9000455 | Rock Creek (2052) | | Bay |
| 320132 | Rose Garden Pond | | Lake |
| 320043 | Roseate, Lake | Purdy Pond | Lake |
| 9000088 | Rosemary Canal | | Stream |
| 160702 | Roy, Lake | | Lake |
| 320085 | Royal Coach Village | | Lake |
| 320156 | Royal Tee Country Club (87.1) | | Pond |
| 320157 | Royal Tee Country Club (87.2) | | Pond |
| 160801 | Ruby, Lake | | Lake |
| 9000298 | Runoff To Peace River | | Stream |
| 320134 | Ruttenberg Park | | Lake |
| 9000185 | S-4 Basin | | Stream |
| 9000053 | Saddle Creek | | Stream |
| 9000200 | Saddle Creek Below Lake Hancock | | Stream |
| 9000487 | Saddle Creek Lakes | | Lake |
| 9000124 | Salt Creek | | Stream |
| 9000439 | Salt Creek Tidal | | Bay |
| 9000382 | Sam Knight Creek | | Bay |
| 9000111 | San Carlos Bay | | Bay |
| 9000343 | Sand Branch | | Stream |
| 9000277 | Sand Gully | | Stream |
| 9000334 | Sand Slough | | Stream |
| 9000224 | Sandy Gully | | Stream |
| 9000390 | Sanibel Canal System | | Bay |
| 9000113 | Sanibel Slough East (Sanibel River East) | | Bay |
| 9000134 | Sanibel Slough West (Sanibel River West) | | Bay |
| 320130 | Sanibel View | | Lake |
| 9000348 | Sardis Branch | | Stream |
| 9000486 | Schumacher, Lake | | Lake |
| 160679 | Sears Lake | | Lake |
| 9000435 | Shakett Creek | | Bay |
| 9000097 | Shell Creek | | Stream |
| 320058 | Shell Creek Reservoir | | Lake |
| 9000079 | Shiney Town Slough | | Stream |
| 160685 | Shipp, Lake | | Lake |
| 9000244 | Shirttail Branch | | Stream |
| 9000180 | Shoemaker and Zapato Canals | | Stream |
| 160604 | Silver, Lake (Winter Haven) | | Lake |
| 9000065 | Sink Branch | | Stream |
| 9000102 | Six Mile Cypress Slough | | Stream |
| 160513 | Smart, Lake | | Lake |
| 9000370 | Snover Waterway Canal | | Stream |
| 160701 | Somerset, Lake | Lake John | Lake |
| 9000017 | South Cocoplum Waterway | | Stream |
| 320084 | Southpoint South | | Lake |
| 320111 | Southwind | | Pond |
| 160707 | Spirit Lake | Little Spirit | Lake |
| 9000015 | Spring Creek | | Stream |
| 9000141 | Spring Creek (Marine Segment) | | Bay |
| 9000481 | Spring Creek Estuary Region | | Bay |
| 160589 | Spring Lake | | Lake |
| 160780 | Stahl, Lake | | Lake |
| 160851 | Starr, Lake (South Of Waverly) | | Lake |
| 320076 | Stone Bridge (1) | | Lake |
| 320077 | Stone Bridge (2) | | Pond |
| 9000181 | Stroud Creek | | Stream |
| 160719 | Summit, Lake | | Lake |
| 9000083 | Sunrise Waterways | | Bay |
| 161403 | Surveyors Lake | | Lake |
| 9000041 | Surveyors Lake Drain | | Stream |
| 160544 | Swan Lake | | Lake |
| 160412 | Swoope, Lake | | Lake |
| 9000340 | Tatum Sawgrass Slough | | Stream |
| 9000330 | Taylor Creek | | Stream |
| 9000162 | Telegraph Creek | | Stream |
| 9000161 | Telegraph Swamp | | Stream |
| 9000103 | Ten Mile Canal | | Stream |
| 9000001 | Tenoroc Drain | | Stream |
| 9000485 | Tenoroc, Lake | | Lake |
| 9000484 | Terrie Pond | | Lake |
| 9000495 | The Dunes Community Stormwater Lakes | | Lake |
| 320158 | The Harborage (East) | | Lake |
| 320136 | The Harborage (West) | | Lake |
| 9000104 | The Lakes Park | | Lake |
| 320088 | The Landing | | Lake |
| 160668 | Thomas Lake (Winter Haven) | | Lake |
| 9000254 | Thompson Branch | | Stream |
| 9000296 | Thornton Branch | | Stream |
| 9000084 | Tidal Alligator Creek (North Fork) | | Bay |
| 9000315 | Tidal Creek to Lower Peace River | | Bay |
| 9000012 | Tidal Estero River | | Bay |
| 9000353 | Tidal Myakka River | | Bay |
| 9000309 | Tidal Peace River | | Bay |
| 9000081 | Tidal Shell Creek | | Bay |
| 320083 | Town and River | | Lake |
| 9000156 | Townsend Canal | | Stream |
| 160370 | Tracy, Lake | | Lake |
| 9000383 | Trailer Park Canal | | Bay |
| 9000221 | Tributary To Little Payne | | Stream |
| 9000018 | Tributary to Shakett Creek | | Stream |
| 9000253 | Troublesome Creek | | Stream |
| 9000175 | Trout Creek | | Stream |
| 320033 | Twin Isles Country Club - Pond 2 | | Lake |
| 320037 | Twin Isles Country Club - Pond 3 | | Lake |
| 320030 | Twin Isles Country Club - Pond 4 | | Lake |
| 320029 | Twin Isles Country Club - Pond 5 | | Lake |
| 320032 | Twin Isles Country Club - Pond 6 | | Lake |
| 320031 | Twin Isles Country Club - Pond 7 | | Lake |
| 9000489 | Twin Lakes | | Lake |
| 9000256 | Unnamed Branch (1852) | | Stream |
| 9000257 | Unnamed Branch (1854) | | Stream |
| 9000288 | Unnamed Branch (1974) | | Stream |
| 9000322 | Unnamed Creek (1867) | | Stream |
| 9000358 | Unnamed Creek (1998) | | Stream |
| 9000362 | Unnamed Creek (2006) | | Stream |
| 9000363 | Unnamed Creek (2007) | | Stream |
| 9000365 | Unnamed Creek (2011) | | Stream |
| 9000368 | Unnamed Creek (2019) | | Stream |
| 9000369 | Unnamed Creek (2022) | | Stream |
| 9000373 | Unnamed Creek (2029) | | Stream |
| 9000374 | Unnamed Creek (2031) | | Stream |
| 9000376 | Unnamed Creek (2034) | | Stream |
| 9000377 | Unnamed Creek (2036) | | Stream |
| 9000378 | Unnamed Creek (2037) | | Stream |
| 9000379 | Unnamed Creek (2038) | | Stream |
| 9000240 | Unnamed Ditch (1815) | | Stream |
| 9000333 | Unnamed Ditch (1918) | | Stream |
| 9000346 | Unnamed Ditch (1960) | | Stream |
| 9000361 | Unnamed Ditch (2004) | | Stream |
| 9000120 | Unnamed Ditch (2024) | | Stream |
| 9000456 | Unnamed Ditch (2057) | | Stream |
| 9000313 | Unnamed Ditch (2058) | | Stream |
| 9000366 | Unnamed Ditch System (2012) | | Stream |
| 9000367 | Unnamed Ditch System (2013) | | Stream |
| 9000037 | Unnamed Ditches (1602) | | Stream |
| 9000238 | Unnamed Ditches (1808) | | Stream |
| 9000295 | Unnamed Ditches (2003) | | Stream |
| 9000057 | Unnamed Drain (1545) | | Stream |
| 9000208 | Unnamed Drain (1735) | | Stream |
| 9000342 | Unnamed Drain (1946) | | Stream |
| 9000438 | Unnamed Drain (1987) | | Stream |
| 9000359 | Unnamed Drain (1999) | | Stream |
| 9000215 | Unnamed Run (1759) | | Stream |
| 9000220 | Unnamed Run (1764) | | Stream |
| 9000226 | Unnamed Run (1775) | | Stream |
| 9000235 | Unnamed Run (1799) | | Stream |
| 9000237 | Unnamed Run (1805) | | Stream |
| 9000269 | Unnamed Run (1905) | | Stream |
| 9000189 | Unnamed Slough (1608) | | Stream |
| 9000291 | Unnamed Slough (1986) | | Stream |
| 9000265 | Unnamed Stream (1884) | | Stream |
| 9000282 | Unnamed Stream (1957) | | Stream |
| 9000247 | Upper Bee Branch | | Stream |
| 9000139 | Upper Corkscrew Marsh | | Stream |
| 9000436 | Upper Lemon Bay | | Bay |
| 14608 | Upper Myakka Lake | | Lake |
| 9000091 | Upper Tidal Caloosahatchee River | | Bay |
| 16762 | Venice Gardens Lake | Pond L28-37(A,B,C), Orchid Lakes, Venice Gardens Pond, Lake Jasmine, Lake LaGorce, Lake Magnolia, Lake Shamrock | Lake |
| 160798 | Venus Lake | | Lake |
| 320039 | Venus, Lake | | Lake |
| 9000033 | Wahneta Farms Drainage Canal | | Stream |
| 9000283 | Walker Branch | | Stream |
| 9000491 | Warm Mineral Springs | Salt Spring | Bay |
| 320098 | Wellington | | Pond |
| 9000250 | West Fork Horse Creek | | Stream |
| 320175 | West Rock Lake | | Lake |
| 9000000 | West Wales Drainage Canal | | Stream |
| 320144 | Westminster | | Lake |
| 9000210 | Whidden Creek | | Stream |
| 9000398 | Whidden Creek (2079) | | Bay |
| 9000105 | Whiskey (Wyoua) Creek | | Bay |
| 160441 | Whistler, Lake | | Lake |
| 9000344 | Wildcat Slough | | Stream |
| 9000409 | Winegourd Creek | | Stream |
| 9000323 | Wingate (Johnson) Creek | | Stream |
| 9000182 | Winkler Canal | | Stream |
| 160775 | Winterset, Lake | Little Winterset | Lake |
| 9000451 | Woodmere Creek | | Stream |
| 16349 | Woodmere, Lake | | Lake |
| 320100 | Wyldewood Lakes (1) | | Lake |
| 320101 | Wyldewood Lakes (2) | | Lake |
| 320102 | Wyldewood Lakes (3) | | Lake |
| 9000173 | Yellow Fever Canals | | Stream |
| 9000174 | Yellow Fever Creek | | Stream |
| 9000329 | Young Creek | | Stream |
| 9000407 | Yucca Flat Woods | | Bay |
| 9000402 | Yucca Pen Creek | | Stream |
| 9000404 | Yucca Pen Creek (Marine Segment) | | Bay |